118 lines
2.9 KiB
Markdown
118 lines
2.9 KiB
Markdown
# BioMixQA
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## Overview
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BiomixQA is a curated biomedical question-answering dataset designed to evaluate AI models on biomedical knowledge and reasoning. It has been utilized to validate the Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) framework across different LLMs.
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## Task Description
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- **Task Type**: Biomedical Multiple-Choice Question Answering
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- **Input**: Biomedical question with multiple answer choices
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- **Output**: Correct answer letter
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- **Domain**: Biomedical sciences, healthcare, life sciences
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## Key Features
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- Curated biomedical questions from diverse sources
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- Tests medical and biological knowledge comprehension
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- Validates RAG framework effectiveness for biomedical domain
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- Multiple-choice format for standardized evaluation
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- Useful for evaluating healthcare AI systems
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## Evaluation Notes
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- Default configuration uses **0-shot** evaluation
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- Simple accuracy metric for performance measurement
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- Evaluates on test split
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- No few-shot examples provided
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## Properties
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| Property | Value |
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|----------|-------|
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| **Benchmark Name** | `biomix_qa` |
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| **Dataset ID** | [extraordinarylab/biomix-qa](https://modelscope.cn/datasets/extraordinarylab/biomix-qa/summary) |
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| **Paper** | N/A |
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| **Tags** | `Knowledge`, `MCQ`, `Medical` |
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| **Metrics** | `acc` |
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| **Default Shots** | 0-shot |
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| **Evaluation Split** | `test` |
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## Data Statistics
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| Metric | Value |
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|--------|-------|
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| Total Samples | 306 |
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| Prompt Length (Mean) | 344.93 chars |
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| Prompt Length (Min/Max) | 316 / 393 chars |
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## Sample Example
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**Subset**: `default`
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```json
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{
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"input": [
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{
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"id": "5e830918",
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"content": "Answer the following multiple choice question. The entire content of your response should be of the following format: 'ANSWER: [LETTER]' (without quotes) where [LETTER] is one of A,B,C,D,E.\n\nOut of the given list, which Gene is associated with head and neck cancer and uveal melanoma.\n\nA) ABO\nB) CACNA2D1\nC) PSCA\nD) TERT\nE) SULT1B1"
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}
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],
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"choices": [
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"ABO",
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"CACNA2D1",
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"PSCA",
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"TERT",
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"SULT1B1"
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],
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"target": "B",
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"id": 0,
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"group_id": 0,
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"metadata": {}
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}
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```
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## Prompt Template
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**Prompt Template:**
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```text
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Answer the following multiple choice question. The entire content of your response should be of the following format: 'ANSWER: [LETTER]' (without quotes) where [LETTER] is one of {letters}.
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{question}
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{choices}
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```
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## Usage
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### Using CLI
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```bash
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evalscope eval \
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--model YOUR_MODEL \
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--api-url OPENAI_API_COMPAT_URL \
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--api-key EMPTY_TOKEN \
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--datasets biomix_qa \
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--limit 10 # Remove this line for formal evaluation
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```
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### Using Python
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```python
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from evalscope import run_task
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from evalscope.config import TaskConfig
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task_cfg = TaskConfig(
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model='YOUR_MODEL',
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api_url='OPENAI_API_COMPAT_URL',
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api_key='EMPTY_TOKEN',
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datasets=['biomix_qa'],
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limit=10, # Remove this line for formal evaluation
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)
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run_task(task_cfg=task_cfg)
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```
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